Publications

Found 267 results. Export: Tagged | XML
2016
Schilder, J., Ubbink, M. , Weak self-association of cytochrome c peroxidase molecules observed by paramagnetic NMR, Journal of Biomolecular Nmr, vol. 65, no. 1, pp. 29-40. DOI
Dame, R.T., Tark-Dame, M. , Bacterial chromatin: converging views at different scales, Current Opinion in Cell Biology, vol. 40, pp. 60-65. DOI
Zhang, H.Y., van Ingen, H. , Isotope-labeling strategies for solution NMR studies of macromolecular assemblies, Current Opinion in Structural Biology, vol. 38, pp. 75-82. DOI
Driessen, R.P.C., Lin, S.N., Waterreus, W.J., van der Meulen, A.L.H., van der Valk, R.A., Laurens, N., Moolenaar, G.F., Pannu, N.S., Wuite, G.J.L., Goosen, N., Dame, R.T. , Diverse architectural properties of Sso10a proteins: Evidence for a role in chromatin compaction and organization, Scientific Reports, vol. 6. DOI
Venkata, B.S., Keizers, P.H.J., Drijfhout, J.W., Ubbink, M. , A Focal Adhesion Kinase-Derived Peptide Binds the Src SH3 Domain in Two Orientations, As Demonstrated Using Paramagnetic Nuclear Magnetic Resonance, Biochemistry, vol. 55, no. 1, pp. 29-37. DOI
Schilder, J., Liu, W.M., Kumar, P., Overhand, M., Huber, M., Ubbink, M. , Protein docking using an ensemble of spin labels optimized by intra-molecular paramagnetic relaxation enhancement, Physical Chemistry Chemical Physics, vol. 18, no. 8, pp. 5729-5742. DOI
Ben Bdira, F., Jiang, J., Kallemeijn, W., de Haan, A., Florea, B. I, Bleijlevens, B., Boot, R., Overkleeft, H.S., Aerts, J.M., Ubbink, M. , Hydrophobic Interactions Contribute to Conformational Stabilization of Endoglycoceramidase II by Mechanism-Based Probes, Biochemistry, vol. 55, no. 34, pp. 4823-4835. DOI
2015
Hiruma, Y., Sacristan, C., Pachis, S.T., Adamopoulos, A., Kuijt, T., Ubbink, M., von Castelmur, E., Perrakis, A., Kops, G.J.P.L. , Competition between MPS1 and microtubules at kinetochores regulates spindle checkpoint signaling, Science, vol. 348, no. 6240, pp. 1264-1267. DOI
Howe, C.J., Rich, P.R., Ubbink, M. , Derek Bendall (1930-2014), Photosynthesis Research, vol. 124, no. 3, pp. 249-252. DOI
Peeters, E., Driessen, R.P.C., Werner, F., Dame, R.T. , The interplay between nucleoid organization and transcription in archaeal genomes, Nature Reviews Microbiology, vol. 13, no. 6, pp. 333-341.
Schilder, J., Loehr, F., Schwalbe, H., Ubbink, M. , The cytochrome c peroxidase and cytochrome c encounter complex: The other side of the story (vol 588, pg 1873, 2014), Febs Letters, vol. 589, no. 16, pp. 2169-2169. DOI
Skinner, S.P., Liu, W., Hiruma, Y., Timmer, M., Blok, A., Hass, M.A.S., Ubbink, M. , Delicate conformational balance of the redox enzyme cytochrome P450cam, Proceedings of the National Academy of Sciences of the United States of America, vol. 112, no. 29, pp. 9022-9027. DOI
Monachino, E., van der Valk, R.A., Jergic, S., Dixon, N.E., Dame, R.T., van Oijen, A.M. , How Does the Replication Machinery Deal with Roadblocks: A Single-Molecule Investigation, Biophysical Journal, vol. 108, no. 2, pp. 69A-69A.
Lin, S., Danes, J.C., Hoekstra, T.P., Kamsma, D., Sitters, G., Depken, M., Dame, R.T., Wuite, G. , Resolving the Kinetic States of a Proofreading DNA Polymerase, Biophysical Journal, vol. 108, no. 2, pp. 70A-70A.
Camacho-Zarco, A.R., Munari, F., Wegstroth, M., Liu, W., Ubbink, M., Becker, S., Zweckstetter, M. , Multiple Paramagnetic Effects through a Tagged Reporter Protein, Angewandte Chemie-International Edition, vol. 54, no. 1, pp. 336-339. DOI
Chintakayala, K., Sellars, L.E., Singh, S.S., Shahapure, R., Westerlaken, I., Meyer, A.S., Dame, R.T., Grainger, D.C. , DNA recognition by Escherichia coli CbpA protein requires a conserved arginine-minor-groove interaction, Nucleic acids research, vol. 43, no. 4, pp. 2282-92. DOI
Hass, M.A.S., Liu, W., Agafonov, R.V., Otten, R., Phung, L.A., Schilder, J.T., Kern, D., Ubbink, M. , A minor conformation of a lanthanide tag on adenylate kinase characterized by paramagnetic relaxation dispersion NMR spectroscopy, Journal of biomolecular NMR, vol. 61, no. 2, pp. 123-36. DOI
Henneman, B., Dame, R.T. , Archaeal histones: dynamic and versatile genome architects, AIMS Mircobiology, vol. 1, no. 1, pp. 72-81. DOI
Hass, M.A.S., Mulder, F.A.A. , Contemporary NMR studies of protein electrostatics, Annual Review of Biophysics, vol. 44, pp. 2.1-2.23. DOI
2014
Driessen, R.P.C., Sitters, G., Laurens, N., Moolenaar, G.F., Wuite, G.J.L., Goosen, N., Dame, R.T. , Effect of Temperature on the Intrinsic Flexibility of DNA and Its Interaction with Architectural Proteins, Biochemistry, vol. 53, no. 41, pp. 6430-6438. DOI
Bashir, Q., Meulenbroek, E.M., Pannu, N.S., Ubbink, M. , Engineering specificity in a dynamic protein complex with a single conserved mutation, Febs Journal, vol. 281, no. 21, pp. 4892-4905. DOI
Liu, W.M., Skinner, S.P., Timmer, M., Blok, A., Hass, M.A.S., Filippov, D.V., Overhand, M., Ubbink, M. , A Two-Armed Lanthanoid-Chelating Paramagnetic NMR Probe Linked to Proteins via Thioether Linkages, Chemistry-a European Journal, vol. 20, no. 21, pp. 6256-6258. DOI
Schilder, J., Lohr, F., Schwalbe, H., Ubbink, M. , The cytochrome c peroxidase and cytochrome c encounter complex: The other side of the story, Febs Letters, vol. 588, no. 10, pp. 1873-1878. DOI
Guan, J.Y., Foerster, J.M., Drijfhout, J.W., Timmer, M., Blok, A., Ullmann, G.M., Ubbink, M. , An Ensemble of Rapidly Interconverting Orientations in Electrostatic Protein-Peptide Complexes Characterized by NMR Spectroscopy, ChemBioChem, vol. 15, no. 4, pp. 556-566. DOI
Liang, Y., Baclayon, M., van der Valk, R., Dame, R.T., Roos, W.H., Wuite, G.J.L. , Probing the Unbinding Kinetics of DNA-H-NS-DNA Protein Complexes by a High-Speed and High-Throughput Single-Molecule Pulling Assay using Atomic Force Microscopy, Biophysical Journal, vol. 106, no. 2, pp. 386A-386A.